PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000434.1.g00005.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 145aa MW: 16145 Da PI: 6.2774

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000434.1.g00005.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55	2.7e-17	71	142	1	73
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekd 73 kfY eYA++vGFsvr+ + ++ +g++ r++ C+k+g++ ++k k +e+r+r++ r gC+a++ vk++k+ FANhyb_rscf00000434.1.g00005.1 71 KFYTEYARRVGFSVRVMQRRRG-IDGTTLARRLGCNKQGFSPNHKGKLGHEQRPRVSAREGCNATILVKMDKS 142 6**************98887.9999****************9*******************9874 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.7E-15	71	142	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MSSSSFFKEL LFTHKRTTIT TTTMDLEDEE DEEEVGAVGG SAEVNMDGSE GGPVGEPYVG 60 MEFDSEEDAK KFYTEYARRV GFSVRVMQRR RGIDGTTLAR RLGCNKQGFS PNHKGKLGHE 120 QRPRVSAREG CNATILVKMD KSAQR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004290122.1	2e-72	PREDICTED: protein FAR1-RELATED SEQUENCE 1
TrEMBL	A0A2P6PTS9	5e-55	A0A2P6PTS9_ROSCH; Putative transcription factor FAR family
STRING	XP_004290122.1	7e-72	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.2	4e-35	FAR1 family protein