PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000425.1.g00002.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 656aa MW: 74146.4 Da PI: 7.1397

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000425.1.g00002.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.7	1.3e-20	53	146	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgk 75 +fY+ +Ak++GFs+r+++++ + + +t+r+f+C + g+++ + ++ k++r+r+++r+gC+a +++ k+ + FANhyb_rscf00000425.1.g00002.1 53 EFYCGFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQMKPAEDGKSQRNRKSSRCGCQAYMRIVKRVefdVPE 131 6*************9998874556679***************9***************98887677789 PP FAR1 76 wevtkleleHnHela 90 w+vt +++ HnHel FANhyb_rscf00000425.1.g00002.1 132 WRVTGFSNVHNHELL 146 ***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-17	53	146	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.8E-9	269	322	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.495	456	504	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-8	476	501	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-7	479	506	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence Send to blast
MSEGTSTRMD DLSQDDAGTI EETAEDSILS RQTCLNLVPV VGQRFASQDA AYEFYCGFAK 60 QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGYPQMKPAE DGKSQRNRKS SRCGCQAYMR 120 IVKRVEFDVP EWRVTGFSNV HNHELLKSNE VSQLAAYCSM SPDDKSRICM YAKAGMSVRQ 180 MMRLMELEKG VKLGCLTFTE VDVRNLLQSF RNVNRDNDAI DLIAMCKKMK DENPDFKYDF 240 KIDGHNRLEH IAWSYGSSIQ LYEKFGDAVV FDTTYRLDAY DMLLGIWLGV DNHGMICCFG 300 CVLLRDENVQ SFFWALKLLL SSCLKLGTPF AYGTLLKSSQ SGFLHLLDLD MMSGKPDFDQ 360 LYNLRSAEDF EERWMEMVDR YGLHTNKHAA DIVNYSDRTG AKQKLQQKLQ RVCLKTGSPI 420 ESHAASVLTP YAFGKLQEEL VLAPQYASLP VDEFCFQVRH HTQADGGCKV IWVPSQEHIS 480 CSCCEFEFTG ILCRHVLRVL SNNNCFRIPN QYLPTRWCGV SSSSTNTFQN AKDKSEKIQL 540 LESMASTLVA ESSETEERLH VAYEQIAVVL SRVKDLPSTT RKAIEGSSNC PPDICPPDIM 600 TLPEVEVDDG VVRFPIGNSH DSVSSGKPKE RRPKETVESN RKRTRQCAGP CCLSVQ

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence Send to blast

MSEGTSTRMD DLSQDDAGTI EETAEDSILS RQTCLNLVPV VGQRFASQDA AYEFYCGFAK  60
QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGYPQMKPAE DGKSQRNRKS SRCGCQAYMR  120
IVKRVEFDVP EWRVTGFSNV HNHELLKSNE VSQLAAYCSM SPDDKSRICM YAKAGMSVRQ  180
MMRLMELEKG VKLGCLTFTE VDVRNLLQSF RNVNRDNDAI DLIAMCKKMK DENPDFKYDF  240
KIDGHNRLEH IAWSYGSSIQ LYEKFGDAVV FDTTYRLDAY DMLLGIWLGV DNHGMICCFG  300
CVLLRDENVQ SFFWALKLLL SSCLKLGTPF AYGTLLKSSQ SGFLHLLDLD MMSGKPDFDQ  360
LYNLRSAEDF EERWMEMVDR YGLHTNKHAA DIVNYSDRTG AKQKLQQKLQ RVCLKTGSPI  420
ESHAASVLTP YAFGKLQEEL VLAPQYASLP VDEFCFQVRH HTQADGGCKV IWVPSQEHIS  480
CSCCEFEFTG ILCRHVLRVL SNNNCFRIPN QYLPTRWCGV SSSSTNTFQN AKDKSEKIQL  540
LESMASTLVA ESSETEERLH VAYEQIAVVL SRVKDLPSTT RKAIEGSSNC PPDICPPDIM  600
TLPEVEVDDG VVRFPIGNSH DSVSSGKPKE RRPKETVESN RKRTRQCAGP CCLSVQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004296256.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2P6QYY6	0.0	A0A2P6QYY6_ROSCH; Putative transcription factor FAR family
STRING	XP_004296256.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]