PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000295.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 478aa    MW: 53306.4 Da    PI: 5.2379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000295.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.4e-13262313155
                                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++++k+L+
  FANhyb_rscf00000295.1.g00003.1 262 QRMTHIAVERNRRRQMNDHLNVLRSLMPPS---YIQRGDQASIVGGAIDFVKELE 313
                                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.62E-13260317No hitNo description
PROSITE profilePS5088815.777261312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16261330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-11262313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-14262326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-11267318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.987406478IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MITRDLEHNS LVSKDVPSVV DMKDILEQLW VDMWEIGTDP SADYVHLERD RASSESPHNG  60
LSSQLDKTAT ANNAWDLCID QGFTTTTTTT HSLRFEEEEE AQYLSGLEDR MPFLQMLQNI  120
DFPPCDFSPK EPSFQALLRL QLLNKATTAV WPEMGNTQNA QIHTLEALES CVTQDNQQQL  180
YSPAKSEGQD PHQNNPLSVS GTLEGGGGAS SDCNQELQQL NSAKMTPNQT QFTKSASSPA  240
TRERRKRKRT RPTKNKEEVE SQRMTHIAVE RNRRRQMNDH LNVLRSLMPP SYIQRGDQAS  300
IVGGAIDFVK ELEQHLQSLE AQKRMRRAEG FTTTNVDPNN NNSMTSSSPS SSSAMTMPSN  360
GMFMSLSQCR IGSTEEGNTR GDDGVTAQNK SEAAEVDVTV IQTHVNLKVQ CQKRPGQLVR  420
ALVAFEDIRL TVLHLNITSS EDKVLYSFNL KIEEGCKLGS ADDIARAVHQ IFSFINGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243248RRKRKR
2262273RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306611.20.0PREDICTED: transcription factor bHLH57-like
TrEMBLA0A2P6SIV40.0A0A2P6SIV4_ROSCH; Putative transcription factor bHLH family
STRINGXP_004308405.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.13e-68bHLH family protein