PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000201.1.g00016.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 344aa    MW: 38080.1 Da    PI: 6.0408
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000201.1.g00016.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.72.4e-28176236259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                     +Dg++WrKYGqKe+ g +fprsYYrCt++   +Cp+kk+v+r ++dp ++e++Y+g+H+++
  FANhyb_rscf00000201.1.g00016.1 176 EDGFTWRKYGQKEIMGCRFPRSYYRCTHQklyNCPAKKQVQRLDNDPLTFEVMYRGDHTCH 236
                                     7****************************999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.5E-27172237IPR003657WRKY domain
SuperFamilySSF1182903.79E-25173237IPR003657WRKY domain
SMARTSM007745.4E-36175237IPR003657WRKY domain
PROSITE profilePS5081120.048176238IPR003657WRKY domain
PfamPF031065.7E-26176236IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDDFSSETVS IIHHGCNLAR DLESNLPNLA NQPETVSKSL EEIIRVFGAA RERLQSSSAA  60
QQDPMSSYVH VAQQQQQIDA SLQQWLRCNY TQAMENHYNQ TQIFAAEKSS AADSGAEALL  120
QGQIHHAMDH IETVVSHEMN AASSSQSRPR RRRDHGEIRK LTVPAPRIGN TEIPPEDGFT  180
WRKYGQKEIM GCRFPRSYYR CTHQKLYNCP AKKQVQRLDN DPLTFEVMYR GDHTCHMSST  240
APSVLPASDD QIKQETMTQT HAATTTQPLG TWLSMDFNAG GEGSSGGGGR GDADGLATST  300
TTTTTRYGKD VEFPVVDLAD AMFNSGSSSS NSMDFMFTSP MDNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-17176235968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308988.20.0PREDICTED: WRKY transcription factor 55
TrEMBLA0A2P6SLU50.0A0A2P6SLU5_ROSCH; Putative transcription factor WRKY family
STRINGXP_004308988.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-54WRKY DNA-binding protein 55