PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000097.1.g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 251aa MW: 28648.4 Da PI: 9.4961 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164 | 5.5e-51 | 14 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhPtdeelv +yLk+kv + +l++ ++i+ev+++k++PwdLp e+e yfFs+r+ ky++g+r+nrat FANhyb_rscf00000097.1.g00004.1 14 LPPGFRFHPTDEELVLQYLKRKVYSCPLPA-SIIPEVEVCKSDPWDLPGD---LEQERYFFSTREAKYPNGNRSNRATG 88 79****************************.89***************54...46799********************* PP NAM 80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 sgyWkatg dk+++++ ++++vg+kktLvfy+g+ p+g +tdW+mheyrl FANhyb_rscf00000097.1.g00004.1 89 SGYWKATGLDKQIVASrGNQVVGMKKTLVFYRGKPPHGARTDWIMHEYRL 138 *************99857778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-60 | 7 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.46 | 14 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-27 | 15 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MEKLSFVRNG ELRLPPGFRF HPTDEELVLQ YLKRKVYSCP LPASIIPEVE VCKSDPWDLP 60 GDLEQERYFF STREAKYPNG NRSNRATGSG YWKATGLDKQ IVASRGNQVV GMKKTLVFYR 120 GKPPHGARTD WIMHEYRLVL AEDKNNSTTQ SHVPVNNWVL CRIFLKKRGS GKNEEEQVQV 180 QACNVDRVVK KPRITRPVFY DFMTKDRANL SLAPCSSSSG SSGVTDVVSS ETEEREESSS 240 CNSLSYFRRK Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-53 | 10 | 167 | 11 | 169 | Stress-induced transcription factor NAC1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00507 | DAP | Transfer from AT5G13180 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004310115.1 | 0.0 | PREDICTED: NAC transcription factor 29 | ||||
Swissprot | Q9FY93 | 1e-104 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A2P6R063 | 1e-165 | A0A2P6R063_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004310115.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 1e-101 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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