PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000065.1.g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | AP2 | ||||||||
Protein Properties | Length: 441aa MW: 48978.6 Da PI: 7.3924 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.1e-17 | 106 | 155 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g FANhyb_rscf00000065.1.g00004.1 106 SQYRGVTFYRRTGRWESHIWD------NgKQVYLGGFDTAHSAARAYDRAAIKFRG 155 78*******************......44************************998 PP | |||||||
2 | AP2 | 45.7 | 1.7e-14 | 198 | 248 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+t+ eAa+a+++a+ k +g FANhyb_rscf00000065.1.g00004.1 198 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDTEIEAARAYDQAAIKCHG 248 89********.7******...5...334336**********99***********9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.75E-16 | 106 | 164 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.0E-10 | 106 | 155 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.5E-32 | 107 | 169 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-17 | 107 | 163 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.991 | 107 | 163 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.41E-24 | 107 | 162 | No hit | No description |
CDD | cd00018 | 1.23E-25 | 198 | 255 | No hit | No description |
Pfam | PF00847 | 5.8E-10 | 198 | 248 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-17 | 198 | 256 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.4E-32 | 199 | 262 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-16 | 199 | 256 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.303 | 199 | 256 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-5 | 200 | 211 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-5 | 238 | 258 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MLDLNLNFFT SDMDTSSNDD SSSSTTLNFL DLQSDVAAEP DHHPSSDSRT IQLFPPPAKQ 60 WLGLSSASSA TYRYRAPPPP PPPPQEQMIA PLSVKKSRRG PRSRSSQYRG VTFYRRTGRW 120 ESHIWDNGKQ VYLGGFDTAH SAARAYDRAA IKFRGTEADI NFSVGDYDED IKQMSNYTKE 180 EFVQILRRQS TGFARGSSKY RGVTLHKCGR WEARMGQLLG KKYIYLGLFD TEIEAARAYD 240 QAAIKCHGSE AVTNFNPILY DGEIEAEPNN AGMDGSLDLN LGIAPPLASE CPNENINLSS 300 FPFPLGRNDL PIHMRSRNEN SVPGFPATMR TQLPRGLMVA SAEPPLTSNM NSNFLPIHME 360 RATEKSMDAN SFRNWAWQMQ GHNDGATPMP LFSAAASSGF PSSTPPSSAA VPPLHFPNTS 420 FLQRHFSPSF TNSTPHFYCR S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004305250.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 | ||||
Swissprot | Q8H443 | 5e-99 | AP23_ORYSJ; APETALA2-like protein 3 | ||||
TrEMBL | A0A3S8T959 | 0.0 | A0A3S8T959_FRAAN; Transcription factor AP216 | ||||
STRING | XP_004305250.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10581 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 5e-91 | related to AP2.7 |
Publications ? help Back to Top | |||
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