PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000005.1.g00037.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 369aa    MW: 41198.8 Da    PI: 8.2484
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000005.1.g00037.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.13.3e-34291192101
                                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS
                    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 
                                     Fl+k+y++++d++++++i ws +g+sfvv++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         we
  FANhyb_rscf00000005.1.g00037.1  29 FLSKTYQLVDDPAIDDVIAWSGDGSSFVVKNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKIIPDR---------WE 98 
                                     9****************************************************************999.........** PP

                                     EEESXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  81 FkhksFkkgkkellekikrkk 101
                                     F+++ F+kg+k+ll++i+r++
  FANhyb_rscf00000005.1.g00037.1  99 FSNDCFRKGQKQLLCDIQRRR 119
                                     *******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-3719113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5725118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.04E-3525118IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.9E-3129118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-202952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-208092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MAPLPVEQNG ESTSGESTQQ QQRGSPTPFL SKTYQLVDDP AIDDVIAWSG DGSSFVVKNP  60
TVFARDLLPK YFKHNNFSSF VRQLNTYGFR KIIPDRWEFS NDCFRKGQKQ LLCDIQRRRI  120
TPPVVASPAG VPAKLVNSPA NSGEEQVTTT TTTSSSSSPR PRIPWQLVEE NERLRKENLR  180
LTKEVAEIKC LCHNVFTMVS SYACAKPPEG GELTRLELAP GKGFSGEETS PKIFGVEIGA  240
KRAREEGGGE ETDLRLRQRG DVKSEASDHS DTPWLKQCHR PIRGQILMTC SHRVLASLEE  300
ALLVLLACHG HSRRIGTNCL TRHWCYYPRC YTYLTSLVLA SLNISIVSLN CMNMDTIDSC  360
LKESKIFGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-252911820120Heat shock factor protein 1
5d5u_B6e-252911829129Heat shock factor protein 1
5d5v_B6e-252911829129Heat shock factor protein 1
5d5v_D6e-252911829129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308106.11e-179PREDICTED: heat stress transcription factor B-2a
SwissprotQ9SCW41e-77HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A1B0VE621e-180A0A1B0VE62_FRAVE; Heat shock factor B2a
STRINGXP_004308106.11e-178(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-63heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]