PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00049744_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 105aa MW: 12024.3 Da PI: 8.9491 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00049 | 42 | 61 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cg++F ++ L H+r FANhyb_icon00049744_a.1.g00001.1 42 PCTECGRTFWSWKALFGHMR 61 6******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.473 | 41 | 63 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.5E-8 | 41 | 65 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.54E-6 | 42 | 66 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 43 | 63 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
QQQRKKRSRL TRPEDADDDN PTNKRPKPAK KPDPSAPKIT TPCTECGRTF WSWKALFGHM 60 RCHPERHWRG IQPPPDFQRA GSSSSNPVHN PELELSMSED DHDAA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011459714.1 | 1e-70 | PREDICTED: zinc finger protein ZAT3-like | ||||
Swissprot | O65499 | 8e-29 | ZAT3_ARATH; Zinc finger protein ZAT3 | ||||
TrEMBL | A0A2P6PTB0 | 1e-45 | A0A2P6PTB0_ROSCH; Putative transcription factor C2H2 family | ||||
STRING | XP_004292305.1 | 5e-70 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6667 | 7 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 3e-25 | C2H2-like zinc finger protein |