PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00027850_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 104aa    MW: 11932.8 Da    PI: 8.5975
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00027850_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.61.3e-076182223
                                      EETTTTEEESSHHHHHHHHHHT CS
                           zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                                      +C+ Cg sF+ + +Lk+H+ +H
  FANhyb_icon00027850_a.1.g00001.1 61 TCEECGASFKKPAYLKQHMLSH 82
                                      6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.17E-61782No hitNo description
SMARTSM00355471942IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8036087IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-66083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00886082IPR015880Zinc finger, C2H2-like
PfamPF138947.3E-46182No hitNo description
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MEKGEAEEKR PIFRDIRRYY CEYCGVCRSK KTLIASHKLA QHKDEMELAK GDEVEVDRSN  60
TCEECGASFK KPAYLKQHML SHSLEFSRKS IGLAVKSVAS CMRV
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287098.11e-52PREDICTED: transcription factor IIIA-like isoform X1
RefseqXP_004287099.17e-53PREDICTED: zinc finger protein 11-like isoform X3
SwissprotQ84MZ42e-19TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2P6RJI76e-40A0A2P6RJI7_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004287098.15e-52(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.27e-22transcription factor IIIA