PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00012668_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 158aa    MW: 18237.7 Da    PI: 4.8511
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00012668_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.17.4e-16250149
                                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                      k+i++k   ++tf+kRr+g++ KA+E ++ +da++a+i fs+ ++ +++
  FANhyb_icon00012668_a.1.g00001.1  2 KKISSKNALKTTFTKRRQGLFRKANEFCTRTDAQIAIIAFSPADRPFTF 50
                                      6899**************************************9987777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.6E-14153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.133154IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-18165IPR002100Transcription factor, MADS-box
PfamPF003192.3E-18350IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MKKISSKNAL KTTFTKRRQG LFRKANEFCT RTDAQIAIIA FSPADRPFTF GHPSEDSVID  60
RYYNPGKQVL EENGGLGSVI DEEDENVKFW SDKPIEAMRL GELKELARLV EDEIEETKMR  120
EACTKDLLGL NWKGDDPKLD DEMKIRESRT MDFLTNWV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304725.21e-108PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2P6R6792e-80A0A2P6R679_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004304725.11e-107(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-24AGAMOUS-like 61