PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00002697_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 302aa    MW: 32755 Da    PI: 6.0003
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00002697_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-05136158123
                                       EEETTTTEEESSHHHHHHHHHHT CS
                           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                       +kC+ C + Fs++  L  H++ H
  FANhyb_icon00002697_a.1.g00001.1 136 FKCNFCQRKFSTSQALGGHQNAH 158
                                       89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.52E-6133163No hitNo description
Gene3DG3DSA:3.30.160.608.0E-5134162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.759136163IPR007087Zinc finger, C2H2
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MMEKQEDAVE ACPLEAPAAS EVPPSPPSLE SKEDGDGDDK SNMKMKEKVI VLIDDSQQSP  60
GKEKEKEEET EAAVGGSTRS SLLLHMAPSN PESNIELALF NSSLSQQVPY NGEEVEESSD  120
ENPGEDDNKK KEPRVFKCNF CQRKFSTSQA LGGHQNAHKQ ERQLAKRRNH AYEMGGGLGH  180
SSHFPYYSSP YSSFSTHSLY GSYNRSSLGV RTDSLIHKPS YTPWSLTYGR FGLGLGGWSR  240
PSSSLINPID QHRIALQGLQ NNINGLGLAG RTATAPSTSG LHSFGGSNLS AVNNRVPPTS  300
GD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470461.10.0PREDICTED: uncharacterized protein LOC105353205
TrEMBLA0A2P6SAW61e-136A0A2P6SAW6_ROSCH; Putative transcription factor C2H2 family
STRINGXP_008231613.11e-52(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.12e-19zinc-finger protein 1