PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00001351_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 134aa MW: 14662.6 Da PI: 9.611 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.5 | 8.7e-10 | 103 | 132 | 1 | 31 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 r rWT+eE+ ++++a k++G W +I + + FANhyb_icon00001351_a.1.g00001.1 103 RERWTEEEHNRFLEALKLYGRA-WQRIEESL 132 78******************88.****8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.47E-7 | 97 | 130 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.259 | 98 | 134 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 5.2E-9 | 101 | 131 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 8.1E-6 | 103 | 131 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.4E-7 | 103 | 133 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.53E-4 | 105 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
FSGSNSDLSV AGSYAVAGGC AVTIPVGVSV TSFHQLRHGR DGSTHSCVSF AVVVVVPTSK 60 ISLSSTATTA LLVIAVLGAF TNERRNLFYT LLARKPYTIT KQRERWTEEE HNRFLEALKL 120 YGRAWQRIEE SLNS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022871881.1 | 4e-22 | protein LHY-like, partial |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2956 | 33 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46830.1 | 4e-21 | circadian clock associated 1 |