PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00000687_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 441aa    MW: 48779.5 Da    PI: 10.0917
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00000687_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.3e-31255312359
                                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                       D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYe eHnh+
  FANhyb_icon00000687_a.1.g00001.1 255 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEAEHNHS 312
                                       99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.2E-17205251IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.0E-32241312IPR003657WRKY domain
PROSITE profilePS5081130.595248314IPR003657WRKY domain
SuperFamilySSF1182903.14E-26250312IPR003657WRKY domain
SMARTSM007745.1E-37253313IPR003657WRKY domain
PfamPF031062.4E-26255311IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MAVDFMGYRN FSSAKLEENA VVQEAASGLE SVEKLIRLLS SSSSSSQQKQ DNNNNKYHHS  60
MDMDCTAVAD AAVSKFKKVI SLLGRTRTGH ALFRRAPLGP THDSSTKPIE SSSSTRVYHA  120
TPIQQIPPPP PSVVMHHMEQ GTKDSSTTIN FSSYSSAATT SFMSSLTGDS DSKQQQPMSS  180
SAFQITNMSQ VSSAGKPPLS SASLKRKCSS DTLGSGKCGA SSSGRCHCSK KRKLRLKRVV  240
RVPAISLKMA DIPPDDYSWR KYGQKPIKGS PHPRGYYKCS SVRGCPARKH VERALDDPSM  300
LVVTYEAEHN HSLNIAEASN LILESTSSSR RYCSWARTRF NLEGDRVFSF FGCLLLLSLW  360
LLSSSITITT KLFQIKEIVK VGEFKEMKGT RSKNDKEVDQ HVVLVTVDQS NLWGWTVAGS  420
KRLIYCHNYQ QGFRLLQILL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-202513131576Probable WRKY transcription factor 4
2lex_A4e-202513131576Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288006.10.0PREDICTED: probable WRKY transcription factor 15
SwissprotQ9STX09e-89WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A2P6RNN40.0A0A2P6RNN4_ROSCH; Putative transcription factor WRKY family
STRINGXP_004288006.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.12e-73WRKY DNA-binding protein 15