PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00000111_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 275aa    MW: 30762.3 Da    PI: 5.0793
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00000111_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87.4e-1719108299
                                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                       +kv++ps+v+   +l l+kkf+ eh  + + +++++lede+g++++ k+     +  + l++GW++F  a++L egD
  FANhyb_icon00000111_a.1.g00001.1  19 IKVMLPSHVTGGFWLGLSKKFCCEHL-P-KHDTMIILEDERGEEYQTKY--LAEK--VGLSGGWRGFSIAHELVEGD 89 
                                       699*******************9994.3.35679***************..4444..55****************** PP

                                       EEEEEE-SSSEE..EEEEE-S CS
                                B3  79 fvvFkldgrsefelvvkvfrk 99 
                                       ++vF+++  s+f  +v ++r+
  FANhyb_icon00000111_a.1.g00001.1  90 VIVFHRVTPSKF--KVYIIRS 108
                                       *****7665666..8888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-2011110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-2213113IPR015300DNA-binding pseudobarrel domain
CDDcd100174.67E-2816107No hitNo description
SMARTSM010191.9E-2018109IPR003340B3 DNA binding domain
PROSITE profilePS5086312.01218109IPR003340B3 DNA binding domain
PfamPF023626.8E-1519108IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MERAKAVEAS LAPEFPRLIK VMLPSHVTGG FWLGLSKKFC CEHLPKHDTM IILEDERGEE  60
YQTKYLAEKV GLSGGWRGFS IAHELVEGDV IVFHRVTPSK FKVYIIRSKG SDKWDCALGH  120
MNLDVCIKEM HTGDIATCEE AEYEDVQPIS VENPQKDNTI AYNTIPSPMS DLSEHDNIIE  180
GVVSQVSDGI RLAESVIPFK EVSSLENFNI MVDGFIINAE FPKPVLAKYY DLCCSQNAYL  240
HEHLLKGLNW KLITGAISEI TTIAEAIRTC KASTL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024167348.11e-169B3 domain-containing protein Os01g0234100-like isoform X1
RefseqXP_024167349.11e-169B3 domain-containing protein Os01g0234100-like isoform X2
RefseqXP_024167350.11e-169B3 domain-containing protein Os01g0234100-like isoform X3
RefseqXP_024167351.11e-169B3 domain-containing protein Os01g0234100-like isoform X4
TrEMBLA0A2P6PM871e-167A0A2P6PM87_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_008236526.11e-122(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-40B3 family protein