PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J02939.1.p
Common NameEUGRSUZ_J02939, LOC104423076
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 366aa    MW: 39523.3 Da    PI: 8.7992
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J02939.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.2e-13123167347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+ l++ + ++lG+g+W+ Iar   + Rt+ q+ s+ qky
  Eucgr.J02939.1.p 123 PWTEEEHRLFLIGLQKLGKGDWRGIARNYVTSRTPTQVASHAQKY 167
                       8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.105.7E-4223IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129420.232116172IPR017930Myb domain
SuperFamilySSF466895.1E-17118172IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-18119171IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.1E-11120166IPR009057Homeodomain-like
SMARTSM007173.9E-10120170IPR001005SANT/Myb domain
CDDcd001675.41E-9123168No hitNo description
PfamPF002499.1E-11123167IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MTRRCSHCSH NGHNSRTCPA RGGGGGGGGG GVRLFGVRLT DGSIIKKSAS TSSLSSHHLL  60
PPSSSPSPSP SPSPSQAAGS PPSGDHHYDH HHQQRDPDGY LSDDPAQGAC ASDRRGERKK  120
GVPWTEEEHR LFLIGLQKLG KGDWRGIARN YVTSRTPTQV ASHAQKYFIR QTTAGRKKRR  180
SSLFDMAPEM ATDRPLIPKE TTLPPFARDS DQPDSMPSLD LSLASESKPM ETSSHETVKD  240
VAKTAMVSDV FPCTIPGHFP TYYEQVPLSI WPSTITSVEN KTAEISRHQV LKPIPLLHKE  300
PVNVDELCGM SQLSLLESEN GFKDRPVLSL NLLGEPLRQS AFHANAAPVA SPDISNSKNS  360
PIKAV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J02939.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033837.10.0PREDICTED: uncharacterized protein LOC104423076
TrEMBLA0A059AJT10.0A0A059AJT1_EUCGR; Uncharacterized protein
STRINGXP_010033837.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93132735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.11e-83MYB_related family protein