PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.J00587.1.p | ||||||||
Common Name | EUGRSUZ_J00587, LOC104421368 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | YABBY | ||||||||
Protein Properties | Length: 192aa MW: 20960.5 Da PI: 9.301 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 237.6 | 2.7e-73 | 2 | 163 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 +v +se+vCyv+CnfCntilavsvPs+sl+++vtvrCGhC +llsvn+a a+q + + + +++ e++ + + +s ++++s+ Eucgr.J00587.1.p 2 SVEMASERVCYVHCNFCNTILAVSVPSSSLYTMVTVRCGHCGNLLSVNMAGAVQSAPLPDT--SQKQQPSSENMARGSGS-SSSSRPNNNTSN 91 68899************************************************99999996..33333444444443333.333344444445 PP YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + ss+ e + e+pr+ p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Eucgr.J00587.1.p 92 KFSSF---EPIEAEAPRMTP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 163 55543...467889999999.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.6E-73 | 6 | 163 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.19E-8 | 104 | 156 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.8E-5 | 111 | 157 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MSVEMASERV CYVHCNFCNT ILAVSVPSSS LYTMVTVRCG HCGNLLSVNM AGAVQSAPLP 60 DTSQKQQPSS ENMARGSGSS SSSRPNNNTS NKFSSFEPIE AEAPRMTPIR PPEKRQRVPS 120 AYNRFIKEEI QRIKASNPDI SHREAFSTAA KNWAHFPHIH FGLKLDGNKQ GKADQAIAGD 180 HQGTHKSHGF Y* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.J00587.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ694015 | 2e-61 | FJ694015.1 Dimocarpus longan YAB2-2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010031584.1 | 1e-143 | PREDICTED: putative axial regulator YABBY 2 isoform X1 | ||||
Refseq | XP_018720022.1 | 1e-143 | PREDICTED: putative axial regulator YABBY 2 isoform X1 | ||||
Swissprot | Q9XFB0 | 5e-84 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A059AA64 | 1e-141 | A0A059AA64_EUCGR; Uncharacterized protein | ||||
STRING | XP_010031584.1 | 1e-142 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5581 | 27 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 9e-81 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.J00587.1.p |
Entrez Gene | 104421368 |
Publications ? help Back to Top | |||
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