PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.J00574.1.p | ||||||||
Common Name | EUGRSUZ_J00574, LOC104421354 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | TALE | ||||||||
Protein Properties | Length: 694aa MW: 75355.3 Da PI: 8.9869 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27 | 7.6e-09 | 392 | 429 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk+ gLt +qV++WF N R + Eucgr.J00574.1.p 392 FEHflHPYPKDSDKHMLAKQAGLTRSQVSNWFINARVR 429 554459******************************88 PP | |||||||
2 | BELL | 120 | 1.1e-38 | 256 | 326 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 rqelq+kkakL+++l+eV++rYkqy+ q+q v+ssFe++ag+g ak+Yt+lAl++iSr+F+cLkdai++qi Eucgr.J00574.1.p 256 RQELQMKKAKLVDMLDEVEQRYKQYHSQMQLVVSSFEQAAGIGVAKSYTALALQTISRQFKCLKDAISSQI 326 89********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.8E-60 | 185 | 324 | IPR006563 | POX domain |
Pfam | PF07526 | 1.4E-47 | 190 | 323 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.098 | 370 | 433 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.98E-11 | 373 | 434 | No hit | No description |
SMART | SM00389 | 6.6E-8 | 373 | 437 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.94E-16 | 374 | 440 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.8E-28 | 376 | 439 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.0E-17 | 390 | 429 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 694 aa Download sequence Send to blast |
MATYFHGSSE IEATDGLQTL YILNPNFIPY SNAAHDATAP NTLFLNPMGS ATQPAPSPQL 60 NHNHFVGIPL SGPAAPFGPA ASDVHPNRHE IPSLHSVAPR FRLNHPWGQP DTSAASTDQL 120 QICSATNSAG VSPSQRGLSL SLSTEQSPLS RESDIRGHSH RQFPGINEAR VLARNSSSTV 180 SNVVLGLHGV LLGSKYLKAA QELLDEVVNV GKEIKNHSSA EGANKEKSKL GNKDSSKEEK 240 KVESSSSGSE LGMAHRQELQ MKKAKLVDML DEVEQRYKQY HSQMQLVVSS FEQAAGIGVA 300 KSYTALALQT ISRQFKCLKD AISSQIKATG RSLGEDDCMG VKMEGSRLRY VDHHFQQQRA 360 LHQLGIIHQN NTWRPQRGLP ERAVSVLRAW LFEHFLHPYP KDSDKHMLAK QAGLTRSQVS 420 NWFINARVRL WKPMVEEMYL EETKSREQAG SENGTTRRAA TKSNKDAAGL KSASQEDNAF 480 GMNSSIKSFQ SSPNKALNQA AISPSENSNS TSSTSPMPCA IPPHHGFTLT GRSSNVEVGI 540 TSSPKKPRMS PDLMNPHGII LSRAMDMKGS EPSRELGGGG SDEYIHGGFS AFSMGNIDGR 600 YGNCVALTLG LPHRDQSPSL SVSAAPQNYF PNQSMNHHQL GRTKLVVGNG GEADFFGIAG 660 APQQSQSGSI NYEAIDINNR KRFADHLLPD YVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 6e-16 | 379 | 437 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 6e-16 | 379 | 437 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 5e-16 | 379 | 436 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 5e-16 | 379 | 436 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.J00574.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010031566.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A059AB49 | 0.0 | A0A059AB49_EUCGR; Uncharacterized protein | ||||
STRING | XP_010031566.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5008 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-116 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.J00574.1.p |
Entrez Gene | 104421354 |