PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.J00391.1.p | ||||||||
Common Name | EUGRSUZ_J00391 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C2H2 | ||||||||
Protein Properties | Length: 225aa MW: 25797.7 Da PI: 10.0098 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 24.1 | 9e-08 | 42 | 64 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F+r nL+ H+r H Eucgr.J00391.1.p 42 HYCQICGKGFKRDANLRMHMRAH 64 68*******************99 PP | |||||||
2 | zf-C2H2 | 10.8 | 0.0015 | 170 | 184 | 6 | 20 |
TTEEESSHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHi 20 Cg++Fsrk+ L+ H Eucgr.J00391.1.p 170 CGTTFSRKDKLMGHV 184 ************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.19E-6 | 40 | 67 | No hit | No description |
Pfam | PF13894 | 0.001 | 42 | 64 | No hit | No description |
SMART | SM00355 | 0.0028 | 42 | 64 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.632 | 42 | 69 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.3E-7 | 42 | 103 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 64 | 100 | 133 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 28 | 138 | 160 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MRESPQVGHQ KDEKPRAHHT LSGNSYDIIE LNAEDLLAKY THYCQICGKG FKRDANLRMH 60 MRAHGDEYKT SAALSNPMKN TDSNRCKAND EQERLRPKKY SCPQEGCRWN RKHPKFQPLK 120 SMICIKNHYK RSHCPKMFVC KRCNRKQFSV LSDLRTHEKH CGDAKWQCSC GTTFSRKDKL 180 MGHVALFVGH SPASSVDLMN PARLVQQKVA PTIMQLHGIA YDRG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.J00391.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010031421.1 | 1e-171 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
Swissprot | Q0WT24 | 4e-87 | STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
TrEMBL | A0A059ABF1 | 1e-169 | A0A059ABF1_EUCGR; Uncharacterized protein | ||||
STRING | XP_010031421.1 | 1e-170 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5752 | 25 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 2e-89 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.J00391.1.p |