PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.H03872.1.p

Common Name

EUGRSUZ_H03872

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C3H

Protein Properties

Length: 319aa MW: 34963.8 Da PI: 5.8272

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.H03872.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.2	6.6e-09	59	84	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C +++rtG+C yG+ C+++H++ Eucgr.H03872.1.p 59 GVADCLHYLRTGYCGYGAGCRYNHPR 84 7899********************96 PP
2	zf-CCCH	37.8	3.3e-12	181	206	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ Eucgr.H03872.1.p 181 DEADCVYYLRTGYCGYGARCRFNHPR 206 6789********************96 PP
3	zf-CCCH	29.7	1.1e-09	233	256	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C +++rtG C yG+ C+F+H++ Eucgr.H03872.1.p 233 ADCIYYLRTGNCGYGAGCRFNHPR 256 68********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.235	57	85	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0015	57	84	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-6	59	84	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.92E-6	61	86	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.4E-4	63	84	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.22	179	207	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.0E-5	179	206	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.8E-9	181	206	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.14E-6	182	207	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.4E-6	185	206	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.216	229	257	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.1E-4	229	256	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.32E-6	230	258	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-7	233	256	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.5E-5	235	256	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MNGYAGAHEG SGSDSSPERR DDSGADTGLE APMWQLGLGR DGGGGGGGES GPAYPERPGV 60 ADCLHYLRTG YCGYGAGCRY NHPRDRSTVV GVTRAGGAEY PERAGQPTHR LGLLERRLLF 120 VRPPVRTMNG YPGAQEGPRL NPLPEWPDDP RAETGLEEPM WQLGWGRGGG ESDPAYPERP 180 DEADCVYYLR TGYCGYGARC RFNHPRDRSA LGLGSGSGGG EPDLAYPERP EAADCIYYLR 240 TGNCGYGAGC RFNHPRDRST VTLSDLLFFF YRHLFSFWFW FLAFRCDHLA SWSHFGGDLV 300 VFVTVVLRLD LLAILDYN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.H03872.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018716904.1	1e-151	PREDICTED: zinc finger CCCH domain-containing protein 58 isoform X2
TrEMBL	A0A059B5C3	0.0	A0A059B5C3_EUCGR; Uncharacterized protein
STRING	XP_010024644.1	1e-156	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM25792	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06410.1	6e-29	C3H family protein

Link Out ? help Back to Top
Phytozome	Eucgr.H03872.1.p