PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.H02390.1.p | ||||||||
Common Name | EUGRSUZ_H02390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | bHLH | ||||||||
Protein Properties | Length: 210aa MW: 23686.6 Da PI: 6.3612 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.5 | 1.2e-13 | 10 | 56 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L ++P + kK++Ka+iL A++Y+k+Lq Eucgr.H02390.1.p 10 EHLIAERKRREKLSQSFIALSAIIPGL-----KKMDKASILSDAINYMKQLQ 56 5999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.656 | 6 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.4E-18 | 10 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-11 | 10 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-17 | 10 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.54E-12 | 11 | 60 | No hit | No description |
SMART | SM00353 | 8.4E-15 | 12 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MSRPPIDTRE HLIAERKRRE KLSQSFIALS AIIPGLKKMD KASILSDAIN YMKQLQERVK 60 KLEEEVAIRT VESVVIVKKS QVLAFDDIFS LDENSNHFEQ QLPEIEARVL DKHVLLRIHY 120 EKQKGCMTEI LREIKKLNLS ILNSSVLSFG SSILEMTIVA QMDVDFCMNI EDLVKSLHTS 180 CVGLDEATPC ILIANGNGSC SERRIGLDF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-13 | 11 | 65 | 9 | 63 | Transcription factor MYC2 |
5gnj_B | 2e-13 | 11 | 65 | 9 | 63 | Transcription factor MYC2 |
5gnj_E | 2e-13 | 11 | 65 | 9 | 63 | Transcription factor MYC2 |
5gnj_F | 2e-13 | 11 | 65 | 9 | 63 | Transcription factor MYC2 |
5gnj_G | 2e-13 | 11 | 65 | 9 | 63 | Transcription factor MYC2 |
5gnj_I | 2e-13 | 11 | 65 | 9 | 63 | Transcription factor MYC2 |
5gnj_M | 2e-13 | 11 | 65 | 9 | 63 | Transcription factor MYC2 |
5gnj_N | 2e-13 | 11 | 65 | 9 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 19 | ERKRRE |
2 | 15 | 20 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.H02390.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010026565.2 | 1e-150 | PREDICTED: transcription factor bHLH19 | ||||
Swissprot | Q1PF16 | 1e-51 | BH019_ARATH; Transcription factor bHLH19 | ||||
TrEMBL | A0A059B0T8 | 1e-150 | A0A059B0T8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010026565.1 | 1e-150 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM492 | 27 | 146 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22760.1 | 4e-48 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.H02390.1.p |
Publications ? help Back to Top | |||
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