PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H02389.1.p
Common NameEUGRSUZ_H02389
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 320aa    MW: 35886.9 Da    PI: 5.0434
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H02389.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.5e-14121168355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+h ++Er+RR+++ ++f  L  ++P +     kK++Ka+iL  A++Y+k+Lq
  Eucgr.H02389.1.p 121 RKHLIAERKRREKLSQSFIALSAIIPGL-----KKMDKASILSDAIDYMKQLQ 168
                       5799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.291118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-11121168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-17121181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.61E-14121172No hitNo description
Gene3DG3DSA:4.10.280.105.5E-18122178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-15124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MNAFDFPLED FDSKLFSSET YSPCSLFVPE TTRGLMDLPV EVAPTIMERP MKMPKTERWS  60
NSCSPGTYKA PTMVMSSPSS SSQLISFGSL DSFPTESQQI YDCQTETDRT GAMSRPPMHT  120
RKHLIAERKR REKLSQSFIA LSAIIPGLKK MDKASILSDA IDYMKQLQER VKKLEEEVAI  180
RTVESVVIGK KSQVSAYDDM FSLDENSNHF EQQLPEIEAR VLDKHVLLRI HHEKRKGRTT  240
EILREIEKLN LSILNSSVLS FGSSILEMTI VAQMDVDFCM NIEDLVKNLH TSCGGLDEAS  300
PCTLIANGNG SCSERDELD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126131ERKRRE
2127132RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H02389.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018715883.10.0PREDICTED: transcription factor NAI1
TrEMBLA0A059B0J30.0A0A059B0J3_EUCGR; Uncharacterized protein
STRINGXP_010026564.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.14e-43bHLH family protein