PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01458.1.p
Common NameEUGRSUZ_G01458
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 478aa    MW: 53938.6 Da    PI: 7.8973
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01458.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.16.8e-18120209299
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                       +k ++ps+v+   +l lpkkf++ h   +++++t+tledes++ +e k+   + + +  l++GW++F  a++L+egD +vF+l++ ++f  +v
  Eucgr.G01458.1.p 120 VKHMLPSHVTGGFWLGLPKKFCDLHL--PQQDVTITLEDESSKGYETKY--LGAKMG--LSGGWRGFSIAHNLQEGDALVFQLVKPTRF--KV 204
                       58899*****************8885..35899****************..777755..9**********************9986777..99 PP

                       EEE-S CS
                B3  95 kvfrk 99 
                        ++r+
  Eucgr.G01458.1.p 205 YIVRR 209
                       98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-20111210IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-23112210IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-25117208No hitNo description
PROSITE profilePS5086313.042119210IPR003340B3 DNA binding domain
SMARTSM010192.7E-20119210IPR003340B3 DNA binding domain
PfamPF023629.4E-16120209IPR003340B3 DNA binding domain
PfamPF052669.5E-8356464IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MAIRQDEKPR LLPPPSKVQR GTALKRKEKL LSGRPLGVQR TSCKQQGTSL KRKEKLLCRK  60
PLGLQGTSNK QVICCGLPKL ESPKRERAAD DEYGTASAND ALDRAKRIQS TLSPEYPVMV  120
KHMLPSHVTG GFWLGLPKKF CDLHLPQQDV TITLEDESSK GYETKYLGAK MGLSGGWRGF  180
SIAHNLQEGD ALVFQLVKPT RFKVYIVRRS NFDDVDGALG LLSLDHCLKT GDSENARKTC  240
KISDDDYWKP LTTEDPPQIS QNDNLRACNV LALPVTEQAK SDPGDPVSEV LDGIRFSENT  300
VDFKDVRSIE NFEIIANDLV IDSELSNHFR LKYYELCRSQ KSYLHGRLLE GLNYKLAAGI  360
ISETVNLADA IRASRIVTSM KEFDIWNKTL KAFQDMGMEV GFLRARLERL LELAMRSKRY  420
REAESDRARA EEERCRLEVK LAEVREVISR LDDEIESLRK GSDDLEMTFE EVASAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01458.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010068473.10.0PREDICTED: B3 domain-containing protein Os01g0234100
TrEMBLA0A059BDN90.0A0A059BDN9_EUCGR; Uncharacterized protein
STRINGXP_010068473.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16718911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-40B3 family protein