PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.C03024.1.p | ||||||||
Common Name | EUGRSUZ_C03024, LOC104437829 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | TALE | ||||||||
Protein Properties | Length: 548aa MW: 60569.9 Da PI: 7.4343 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.5 | 2.2e-08 | 466 | 504 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA k gLt +qV++WF N R + Eucgr.C03024.1.p 466 MFQNflHPYPKDAEKHLLALKSGLTRSQVSNWFINARVR 504 5887779******************************88 PP | |||||||
2 | BELL | 81.7 | 9.6e-27 | 337 | 406 | 1 | 71 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 +rqe ++kka+Ll+ll+ Vd+rY+q+ ++++tvis+F+a+++l++ k++t++Al++iS +++L+++i++ Eucgr.C03024.1.p 337 QRQEAEAKKAQLLTLLQVVDDRYNQCLDEIHTVISAFHAATELDP-KIHTRFALHTISILYKNLRERISNY 406 699******************************************.**********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.0E-30 | 271 | 405 | IPR006563 | POX domain |
Pfam | PF07526 | 4.9E-28 | 277 | 404 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.175 | 445 | 508 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.91E-11 | 448 | 509 | No hit | No description |
SMART | SM00389 | 1.7E-5 | 448 | 512 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.1E-15 | 449 | 517 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.6E-26 | 451 | 514 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.7E-14 | 465 | 504 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0090470 | Biological Process | shoot organ boundary specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 548 aa Download sequence Send to blast |
MEHNLFDVSV DMSNRASFLL DGVSAHASAS SFLQSDILNK NNSDHTVGYP IHSNIQGESI 60 GDLQAGITGS QFISNASVPF HGIDALRNAP DFNGAMPISP ACFPAILASR RDLQENINGL 120 PIPLPSIDLL EVGNIPNDGS NVSHMSLGTC SYDEPAGTCK WNANRFQSRT VCPPYPVARN 180 TNTVGWISSG NLNIHMGCAY FPPNSSNELS LSLASSKSSI INLPNISDQC SEISNAGASH 240 HFSNERRAYK SGLNSCNNKE LSLCSASYGA PQLSQLIAGS KYLSGIQEIL AQIASYSLEN 300 LNKVSYVSSG LGSGTSKSQF SSDCRVDEGQ ELEVFGQRQE AEAKKAQLLT LLQVVDDRYN 360 QCLDEIHTVI SAFHAATELD PKIHTRFALH TISILYKNLR ERISNYILAM GEDFGHSSTG 420 DRARSFEASF IQRQWALQQL KRKDQQLWRP QRGLPEKSVS VLRAWMFQNF LHPYPKDAEK 480 HLLALKSGLT RSQVSNWFIN ARVRLWKPMI EEMYSEMNRR KAHHNEDGSS GANQIQRSIN 540 IQKFRMN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 7e-15 | 454 | 511 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 7e-15 | 454 | 511 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 8e-15 | 454 | 512 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 8e-15 | 454 | 512 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.C03024.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010049176.1 | 0.0 | PREDICTED: homeobox protein ATH1 | ||||
Refseq | XP_010049177.1 | 0.0 | PREDICTED: homeobox protein ATH1 | ||||
Refseq | XP_018726789.1 | 0.0 | PREDICTED: homeobox protein ATH1 | ||||
Refseq | XP_018726790.1 | 0.0 | PREDICTED: homeobox protein ATH1 | ||||
Swissprot | P48731 | 1e-108 | ATH1_ARATH; Homeobox protein ATH1 | ||||
TrEMBL | A0A059CTW4 | 0.0 | A0A059CTW4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010049175.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8228 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 1e-108 | homeobox gene 1 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.C03024.1.p |
Entrez Gene | 104437829 |
Publications ? help Back to Top | |||
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