PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03208.1.p
Common NameEUGRSUZ_B03208, LOC104433441
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 256aa    MW: 29483.7 Da    PI: 9.6704
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03208.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.64.8e-5351301128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeel+v+yL+++v ++++++ ++i+e+diyk++Pw+L +++k +ekewyfF+ r++ky +g r+nra+ sgyWkatg+dk+++
  Eucgr.B03208.1.p   5 LPPGFRFHPTDEELIVYYLQNQVMSRPCPV-SIISELDIYKFDPWQLTENAKLGEKEWYFFTLRSRKYLNGARPNRAAVSGYWKATGSDKAIY 96 
                       79****************************.89**************9888999*************************************** PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s ++++vg+kk+Lvfykgr pkg ktdW+mheyrl
  Eucgr.B03208.1.p  97 S-GSKHVGVKKSLVFYKGRPPKGLKTDWIMHEYRL 130
                       *.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-623154IPR003441NAC domain
PROSITE profilePS5100559.1535154IPR003441NAC domain
PfamPF023652.9E-266130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MNHELPPGFR FHPTDEELIV YYLQNQVMSR PCPVSIISEL DIYKFDPWQL TENAKLGEKE  60
WYFFTLRSRK YLNGARPNRA AVSGYWKATG SDKAIYSGSK HVGVKKSLVF YKGRPPKGLK  120
TDWIMHEYRL ADSRTNVQHR SMKLDWVLCR IYKKQRSSKS LDRKVEDFHG QSNRTMTNEA  180
SDKQVMRLPN FCSLTPDLLQ LDYFGPISQF LIGSSYHPTF DGQNIIVDGE AYGAEKKLQL  240
HGNKVSCLYA DQGKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-62515917170NO APICAL MERISTEM PROTEIN
1ut4_B9e-62515917170NO APICAL MERISTEM PROTEIN
1ut7_A9e-62515917170NO APICAL MERISTEM PROTEIN
1ut7_B9e-62515917170NO APICAL MERISTEM PROTEIN
3swm_A1e-61515920173NAC domain-containing protein 19
3swm_B1e-61515920173NAC domain-containing protein 19
3swm_C1e-61515920173NAC domain-containing protein 19
3swm_D1e-61515920173NAC domain-containing protein 19
3swp_A1e-61515920173NAC domain-containing protein 19
3swp_B1e-61515920173NAC domain-containing protein 19
3swp_C1e-61515920173NAC domain-containing protein 19
3swp_D1e-61515920173NAC domain-containing protein 19
4dul_A9e-62515917170NAC domain-containing protein 19
4dul_B9e-62515917170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03208.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044485.10.0PREDICTED: NAC transcription factor 29
SwissprotK4BWV22e-95NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLA0A059D7700.0A0A059D770_EUCGR; Uncharacterized protein
STRINGXP_010044485.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77072641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-96NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]