PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B01415.1.p
Common NameEUGRSUZ_B01415
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 600aa    MW: 65660.6 Da    PI: 5.2404
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B01415.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.61.3e-33139196260
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       +DgynWrKYGqK+vkgsefprsYY+Ct+++C+vkkkvers  d++++ei+Y+g+Hnh+k
  Eucgr.B01415.1.p 139 EDGYNWRKYGQKQVKGSEFPRSYYKCTQPNCQVKKKVERSL-DGQITEIIYKGTHNHPK 196
                       7****************************************.***************85 PP
2WRKY103.41.2e-32357415159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver++++ k+v++tYeg+Hnhe
  Eucgr.B01415.1.p 357 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCSVRKHVERASDNLKYVITTYEGKHNHE 415
                       59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-29131197IPR003657WRKY domain
PROSITE profilePS5081123.652133197IPR003657WRKY domain
SuperFamilySSF1182903.92E-26134197IPR003657WRKY domain
SMARTSM007748.0E-37138196IPR003657WRKY domain
PfamPF031067.7E-26139195IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-35342417IPR003657WRKY domain
SuperFamilySSF1182902.88E-28351417IPR003657WRKY domain
PROSITE profilePS5081137.252352417IPR003657WRKY domain
SMARTSM007742.7E-37357416IPR003657WRKY domain
PfamPF031062.6E-25358415IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
TFSLVTFPAD SSMVHSESTN DGDKGFSSGR TFSFKPDGCS SPLSGFSALQ DQGIGIDKQG  60
FLLEDPKMDI EFQTEIYQEA AEKNGAFNSS SDAEVLSEMN SDGAQEKESV PEEDTRIDNA  120
EEGDQKGMYP SVGTVRTSED GYNWRKYGQK QVKGSEFPRS YYKCTQPNCQ VKKKVERSLD  180
GQITEIIYKG THNHPKPQPI RCGLLRSSFS LNEMSEMADG SGAANKVEGG SVWRNNQLGS  240
KDVRLGPDWR SDGPEQTSST SVLTELSGLL PTSQGKCAVA FESAQTPELS STLASTDGDD  300
EDGATQGSMS HGEDADDEEP ESKRRKSENS LSESNLGSRA VREPRVVIQI ESDIDILDDG  360
YRWRKYGQKV VKGNPNPRSY YKCTSAGCSV RKHVERASDN LKYVITTYEG KHNHEVPAAR  420
NSNLPSGSGN LSPAAVGAQA NMAIPRNSRT NKPEAQVQDL PLFDRKPELH NEFLRSSLLT  480
NFGNDMKFGA SPVFPFKFPP LQSAIPCGSF GLNPSQGAMH QAGPIASLVP DLPISLPYKF  540
RPYPKVPVTG LFDDNHIGKP AGSLQSALSG QRLKQNDMRF LTPKQEQRDD HLYDPCLPVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-33139418878Probable WRKY transcription factor 4
2lex_A3e-33139418878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B01415.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018718541.10.0PREDICTED: WRKY transcription factor WRKY24
SwissprotQ6B6R47e-87WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A059D2Y60.0A0A059D2Y6_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010045965.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17370611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.13e-80WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]