PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02765.1.p
Common NameEUGRSUZ_A02765
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 351aa    MW: 39701.1 Da    PI: 7.1128
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02765.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00067324223
                      EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                      +C +C++ F ++ n+krH r+H
  Eucgr.A02765.1.p  3 RCDKCHREFFSSINYKRHVRVH 24
                      7********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.868229IPR007087Zinc finger, C2H2
PROSITE patternPS000280425IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.7E-5434IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MQRCDKCHRE FFSSINYKRH VRVHHRLRKL DKDSSKNRDL LGPFWDKLSA EEAKEIVSLK  60
NSTMEDVPGT TVIKSLASLI RKPGFPVMPQ FCLKAGSSLL DIVQARSSRF PLSSQDLFGI  120
LDDASEKTFL SGPTLLMRRY IFNKEVGKIG LDPKNLVAFT CFVLEQKLVE AWLTDKDAEA  180
LRFQKLLVEE EEAAQRRQAE ILERKRQKRL RQKEQKAKEH KNGEVNLENS FDIVENEASS  240
DVLGNLSSSE VDIRITDSPS DPVPSLLEVP QLPDAEEGPD FEIESGLGSD YPVFNNLPNV  300
ELQRALGGSH QHLRTTSWHV PRKPRPLSGA LHDFHGFYSL HLSLSSSINM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202209ERKRQKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02765.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018715807.10.0PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104415429
TrEMBLA0A059DJT60.0A0A059DJT6_EUCGR; Uncharacterized protein
STRINGXP_010025018.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56802536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.12e-67C2H2-like zinc finger protein