PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.A01885.1.p | ||||||||
Common Name | EUGRSUZ_A01885, LOC104441115 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | VOZ | ||||||||
Protein Properties | Length: 444aa MW: 49379.6 Da PI: 5.4819 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 396.2 | 7.5e-122 | 203 | 419 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 pppsaflgpkcalwdc+rpaq sew+ dycs++ha+lal eg pg++pvlrp+gi+lkd+ l+++l ak+qgk+vgipec+gaa +kspwna+ Eucgr.A01885.1.p 203 PPPSAFLGPKCALWDCQRPAQRSEWCLDYCSTMHADLALSEGGPGMNPVLRPGGIGLKDDRLLSSLIAKMQGKNVGIPECHGAAIEKSPWNAS 295 89******************************************************************************************* PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 +lfdlsllege irewlffdkprrafesgnrkqrsl dysgrgwhesrkq+mke+gg+krsyymdpqp++sfewhl+eye++++ a+aly+le Eucgr.A01885.1.p 296 KLFDLSLLEGENIREWLFFDKPRRAFESGNRKQRSLSDYSGRGWHESRKQLMKELGGHKRSYYMDPQPPGSFEWHLFEYEVTSSGACALYKLE 388 ********************************************************************************************* PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlta 217 lklv kks+kgk ++ds++dlqk++ rlta Eucgr.A01885.1.p 389 LKLVSIKKSPKGKGMNDSVVDLQKQMRRLTA 419 *****************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MDSETKIKRE ATTQPQLSEK ARKLIDDIPE IMTNCQLAWK GGRTGDSTVL VEQLLRLLSD 60 LKAEINASSP ASPIPVDSLG SFSEEIQRML RVCDEQDDAT STLVELAGLK PAPDIEGFQI 120 TNFKTAQETD FLNFGQQGLG SQEFYQCGID LGMHNTVVND SDQLDYLHFD FHQDDEHGHY 180 GDTNNDKQIG HDFGANILPL VNPPPSAFLG PKCALWDCQR PAQRSEWCLD YCSTMHADLA 240 LSEGGPGMNP VLRPGGIGLK DDRLLSSLIA KMQGKNVGIP ECHGAAIEKS PWNASKLFDL 300 SLLEGENIRE WLFFDKPRRA FESGNRKQRS LSDYSGRGWH ESRKQLMKEL GGHKRSYYMD 360 PQPPGSFEWH LFEYEVTSSG ACALYKLELK LVSIKKSPKG KGMNDSVVDL QKQMRRLTAD 420 VSPDTKHPVK GGMKTDQKAN SEC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.A01885.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010052424.1 | 0.0 | PREDICTED: transcription factor VOZ1 isoform X1 | ||||
Refseq | XP_018731294.1 | 0.0 | PREDICTED: transcription factor VOZ1 isoform X1 | ||||
Refseq | XP_018731297.1 | 0.0 | PREDICTED: transcription factor VOZ1 isoform X1 | ||||
Swissprot | Q9SGQ0 | 1e-141 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A059DH99 | 0.0 | A0A059DH99_EUCGR; Uncharacterized protein | ||||
STRING | XP_010052424.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11060 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-144 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.A01885.1.p |
Entrez Gene | 104441115 |
Publications ? help Back to Top | |||
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