PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS732177.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 293aa    MW: 34648.8 Da    PI: 8.7999
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS732177.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.52.8e-2647129186
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                   +W+ qe+++ + +r ++++r+ ++k++k+lWe +s  mre+gf+rs++qCk+kw+nl +ryk ++++e +    +++++py+++++
  EcS732177.10  47 QWSVQETKEFLMIRADLDRRFMETKRNKQLWEVISTGMREKGFNRSAEQCKCKWKNLVTRYKGCETMEPEA---VRQQFPYYNEMQ 129
                   7********************************************************************85...77899******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.003144106IPR001005SANT/Myb domain
CDDcd122031.19E-2246111No hitNo description
PfamPF138372.4E-2147131No hitNo description
PROSITE profilePS500907.09748104IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEGQFSHHHH HHQHLLQQQQ QLRPQPLPQQ QQHLSVSIEA GSDRFPQWSV QETKEFLMIR  60
ADLDRRFMET KRNKQLWEVI STGMREKGFN RSAEQCKCKW KNLVTRYKGC ETMEPEAVRQ  120
QFPYYNEMQA IFATRMQTML WAETEGGGGA GSTSKSKKAS SSQLSSEDDG DDEDSEGEKA  180
KKKKKAKGNA GTSNSSGGSS SEVRKILEEF MKQQVRMEAE WREAYEAREN ERRMKEMEWR  240
QTMESLENER IMMDRRWRER EEQRRMREEA KAEKRDALIT ALLNKLRRED HNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A7e-1348127786DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031401.11e-117PREDICTED: trihelix transcription factor GT-3b
SwissprotO804501e-72TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A059DC171e-116A0A059DC17_EUCGR; Uncharacterized protein
STRINGXP_010031401.11e-116(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.12e-50Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]