PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS580600.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 95aa MW: 10357.6 Da PI: 10.669 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.6 | 1.4e-17 | 15 | 63 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien+s r +tfskR+ i KKA+EL +LC+aev + fs++g+ + + EcS580600.10 15 KQIENESSRLITFSKRKSSINKKASELVTLCGAEVGFVAFSPSGNPFSF 63 78*****************************************986666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.7E-16 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-14 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.01E-21 | 13 | 82 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.007 | 14 | 67 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-21 | 17 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-14 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-14 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MAGRQTGENP RPGMKQIENE SSRLITFSKR KSSINKKASE LVTLCGAEVG FVAFSPSGNP 60 FSFAHPSIDA VANRFLNRNP SPNNSSQALV ESYRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010059060.1 | 9e-64 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
Swissprot | Q4PSU4 | 3e-22 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A059C6S2 | 6e-52 | A0A059C6S2_EUCGR; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A059C7K0 | 6e-52 | A0A059C7K0_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010059060.1 | 4e-63 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 4e-25 | AGAMOUS-like 57 |
Publications ? help Back to Top | |||
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