PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC062590.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 81aa MW: 8790.31 Da PI: 10.2232 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.5 | 2.3e-20 | 12 | 54 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i + r vt+skRr+g++KKA+EL+ LC+a++avi+fs+ gk EcC062590.10 12 IADPAARLVTYSKRRKGLFKKASELCRLCGARAAVIVFSPAGK 54 7777889**********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.638 | 2 | 62 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.4E-24 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.06E-25 | 3 | 73 | No hit | No description |
SuperFamily | SSF55455 | 1.12E-22 | 4 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-15 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-23 | 11 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-15 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-15 | 39 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MGKRRRTEIA KIADPAARLV TYSKRRKGLF KKASELCRLC GARAAVIVFS PAGKPCSFFS 60 DPSVEDDVIA DHVDAVPPMG L |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018715991.1 | 2e-51 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
Swissprot | Q4PSU4 | 1e-17 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A059D1D1 | 8e-35 | A0A059D1D1_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010026973.1 | 5e-48 | (Eucalyptus grandis) | ||||
STRING | XP_010027015.1 | 3e-48 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 6e-20 | AGAMOUS-like 61 |
Publications ? help Back to Top | |||
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