PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC052235.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 509aa    MW: 56870.9 Da    PI: 6.3588
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC052235.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.72.7e-13458505246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                      +rW+ eE+e l ++v+++G+g+Wk+I ++     + Rt+ ++k++w++
     EcC052235.10 458 KRWSLEEEETLRNGVQRFGKGNWKLILHCYRhifEERTEVDLKDKWRN 505
                      69*********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.495454509IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-12454507IPR009057Homeodomain-like
SMARTSM007174.7E-9456509IPR001005SANT/Myb domain
CDDcd116604.55E-19458508No hitNo description
SuperFamilySSF466896.73E-15459508IPR009057Homeodomain-like
PfamPF002492.9E-10459506IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MEIDPDISRW ILEFLLRQPR LDDGAVKLAL AVLPLLDSDL RLKKSVLLRS IQSEVDAASV  60
SEETLDALEA IEEVDRTTAG GGGGGPPPAV SDAMREAYRA VAVECAARFL HGRVDEGGEY  120
SRAVERIWQG RVRRMEESAV KSGLLSPELL RWGRRVEAAM RDGGERESVL AMNTRGDAFR  180
SVRAYLGEAW ERMGPSFLEV AASRMAEDNP CRELVVTSGR VESHAGERDD LPDVRASTGL  240
NSERPAVRIE DDGEMPETLR PDKGLIKRKQ LARHRRSKVG VKIIHDNGET GRDIASRTRF  300
DTVPSPDVNR VQEALKSSSM ELRAAVADPL PDAIRLADSL VRNAAGSSMN FECAEAQIRE  360
DVNASDASAE QNVGPVPGGE ENHVNQSTNH QNKQCKPSLF ERNTSARTYE WDDSIEGSPE  420
EPLGSDRVQL PSPRRSAVSP LRKPLTRSLK VSGRRKVKRW SLEEEETLRN GVQRFGKGNW  480
KLILHCYRHI FEERTEVDLK DKWRNMNRY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029695.10.0PREDICTED: telomeric repeat-binding factor 2 isoform X1
TrEMBLA0A059CZK20.0A0A059CZK2_EUCGR; Uncharacterized protein
STRINGXP_010029695.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1478467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.24e-12MYB_related family protein