PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC049992.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 133aa    MW: 14611.5 Da    PI: 10.5231
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC049992.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.53.1e-171563149
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                  k+ien+s r +tfskR+  i KKA+EL +LC+aev  + fs++g+ + +
  EcC049992.10 15 KQIENESSRLITFSKRKSSINKKASELVTLCGAEVGFVAFSPSGNPFSF 63
                  78*****************************************986666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.7E-16766IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-13929IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-211388IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.0071467IPR002100Transcription factor, MADS-box
PfamPF003196.5E-211763IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-132944IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-134465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MAGRQTGENP RPGMKQIENE SSRLITFSKR KSSINKKASE LVTLCGAEVG FVAFSPSGNP  60
FSFAHPSIDA VANRFLNRNP SPNNSSQTLV ESYRQAKCKE LNQQHDELYN QIKAEKAQGK  120
ALKRLTKGKS DGA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059060.19e-93PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A059C6S27e-81A0A059C6S2_EUCGR; Uncharacterized protein (Fragment)
TrEMBLA0A059C7K07e-81A0A059C7K0_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010059060.14e-92(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-28AGAMOUS-like 61