PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047941.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 272aa    MW: 29715.3 Da    PI: 9.3282
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047941.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.4e-1458102147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
     EcC047941.10  58 RESWTEQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 102
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-1752108IPR009057Homeodomain-like
PROSITE profilePS5129415.54353107IPR017930Myb domain
TIGRFAMsTIGR015575.8E-1856105IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.5E-756108IPR009057Homeodomain-like
SMARTSM007173.9E-1157105IPR001005SANT/Myb domain
PfamPF002499.4E-1258102IPR001005SANT/Myb domain
CDDcd001677.50E-960103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MVSVNPNPAQ GFYFFDPANT GIHGVNAGSA AEGGGAAPPY AEDPSKKVRK PYTITKSRES  60
WTEQEHDKFL EALHLFDRDW KKIEAFVGSK TVIQIRSHAQ KYFLKVQKNG TSEHVPPPRP  120
KRKAAHPYPQ KAPKAPVVSQ VNGPFQVSSA FLEPEHIVRP DGSALLGNSR TSVALSSWSH  180
NSVPAMSASQ GTKDVGISGP PVPSNCCNSS SNDSTPRSWP NAQAIEPLDQ QNHLRVMPDF  240
AQVYRFIGSV FDPDAGGHLQ RLKQMDPINL ET
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053757.10.0PREDICTED: protein REVEILLE 5 isoform X1
RefseqXP_010053758.10.0PREDICTED: protein REVEILLE 5 isoform X2
SwissprotC0SVG52e-91RVE5_ARATH; Protein REVEILLE 5
TrEMBLA0A059CJK40.0A0A059CJK4_EUCGR; Uncharacterized protein
STRINGXP_010053757.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.22e-73MYB_related family protein
Publications ? help Back to Top
  1. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]