PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC046324.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 145aa MW: 16314.1 Da PI: 12.2197 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.5 | 1.4e-17 | 83 | 129 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i + +r vtfskRr g++KKA+ L+ L++a++a+i+fs+tgk y + EcC046324.10 83 IADLAKRRVTFSKRRGGLFKKANALCKLTGARAAIIVFSTTGKRYSF 129 778889*************************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.03E-20 | 73 | 143 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.7E-19 | 73 | 132 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.086 | 73 | 133 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-14 | 75 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.3E-19 | 82 | 129 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-14 | 95 | 110 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-14 | 110 | 131 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
DCDCRRKPMA SSKSKPHQIL LLPSLLLLFW SYKNSPQNRS PPSLSPRKPR NAPARPLSPS 60 PSRKQLRTPP SMANRRRTGI AKIADLAKRR VTFSKRRGGL FKKANALCKL TGARAAIIVF 120 STTGKRYSFG NPKVEDIISD YLRRN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018718484.1 | 9e-23 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
Refseq | XP_018720723.1 | 2e-22 | PREDICTED: MADS-box transcription factor 47-like | ||||
TrEMBL | A0A059D1D1 | 7e-21 | A0A059D1D1_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010045609.1 | 4e-37 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-19 | AGAMOUS-like 61 |