PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC040884.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 378aa MW: 42204.1 Da PI: 6.5578

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC040884.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.4e-12	172	218	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR++i +++ L ++P++ kK++Ka+iLe A+e++k+Lq EcC040884.10 172 EHVLAERKRREKISKRLIALSAIIPNL-----KKMDKASILEDAIEHLKELQ 218 6899*********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.574	168	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-16	172	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-10	172	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-16	173	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.66E-14	173	219	No hit	No description
SMART	SM00353	9.2E-14	174	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MEILSPRVFP QMVEDAAYFH HHHHQQQANS PFSFDDEFDL FHPSFHSEPC STSSPSHLVP 60 LVSRETMPSF AAPSIEAPRE LTERPWKKLK TERWNSLGAP AHETMTRKVV ISPSPSPSRS 120 LSPDSHLISF GNPDSSPAIS NPIHGTYEIQ DCEGPKTKNT SLASRTPVHA QEHVLAERKR 180 REKISKRLIA LSAIIPNLKK MDKASILEDA IEHLKELQQR VKALEEEAAA AKAVESVVVV 240 KKSQLTTDDD TYSSSDEQSC SQIDRQLSLP EIEARVSGNC VLIKIHCERR NGSVSKMIGE 300 IEELNLTVVN SCIMPFGSSI LDVTILAQVN IYGTQISSIF FPGFNTILFF FREILDAEIN 360 LTKITKLIMH LTHGTPLI

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MEILSPRVFP QMVEDAAYFH HHHHQQQANS PFSFDDEFDL FHPSFHSEPC STSSPSHLVP  60
LVSRETMPSF AAPSIEAPRE LTERPWKKLK TERWNSLGAP AHETMTRKVV ISPSPSPSRS  120
LSPDSHLISF GNPDSSPAIS NPIHGTYEIQ DCEGPKTKNT SLASRTPVHA QEHVLAERKR  180
REKISKRLIA LSAIIPNLKK MDKASILEDA IEHLKELQQR VKALEEEAAA AKAVESVVVV  240
KKSQLTTDDD TYSSSDEQSC SQIDRQLSLP EIEARVSGNC VLIKIHCERR NGSVSKMIGE  300
IEELNLTVVN SCIMPFGSSI LDVTILAQVN IYGTQISSIF FPGFNTILFF FREILDAEIN  360
LTKITKLIMH LTHGTPLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	181	ERKRRE
2	177	182	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010023397.1	0.0	PREDICTED: transcription factor bHLH19
Refseq	XP_018715657.1	0.0	PREDICTED: transcription factor bHLH19
TrEMBL	A0A059B157	0.0	A0A059B157_EUCGR; Uncharacterized protein
STRING	XP_010023397.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM492	27	146

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22750.1	2e-38	bHLH family protein