PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC035750.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 72aa    MW: 7931.2 Da    PI: 10.53
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC035750.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF542.2e-171258349
                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                  i +   r vt+skRr+g++ KA+ L+ LC+a++av++fs+ gk y +
  EcC035750.10 12 IADPAARLVTYSKRRKGLFNKASQLCRLCGARAAVLVFSPAGKPYSF 58
                  67778899**********************************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.469262IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-20261IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-14424IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-22471IPR002100Transcription factor, MADS-box
PfamPF003192.5E-211258IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-142439IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-143960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
MGKRRRTEIA EIADPAARLV TYSKRRKGLF NKASQLCRLC GARAAVLVFS PAGKPYSFGD  60
PSADEIIGDY LR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045944.11e-42PREDICTED: MADS-box protein SOC1-like
RefseqXP_018718484.19e-44PREDICTED: agamous-like MADS-box protein AGL29
SwissprotQ4PSU43e-19AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A059D1D12e-40A0A059D1D1_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010045944.15e-42(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-21AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]