PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC029832.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 352aa    MW: 40319.7 Da    PI: 5.6164
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC029832.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.3e-13165211455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    h ++Er+RR+++ ++f  L  ++P +     kK++Ka+iL  A++Y+k+Lq
  EcC029832.10 165 EHLIAERKRREKLSQSFIALSAIIPGL-----KKMDKASILSDAIDYMKQLQ 211
                   5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.77161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-11165211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-17165224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-17165221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.40E-13166215No hitNo description
SMARTSM003534.1E-15167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
VTEETLHHAY QHHQIMNAFD FPLEDFDFKL FSSETYSPCS PFVLETTRGL MDPPVEVAPT  60
IMERPMKMPK TQRVSNSCSP ETNKAPTMAM SXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXPP IDTREHLIAE RKRREKLSQS  180
FIALSAIIPG LKKMDKASIL SDAIDYMKQL QERVKKLEEK VAIRTLESVV IVKKSQVSAF  240
DDMFSIDENS NHFEQQLPEI EARVLDKHVL LRIHYEKQKG CMTEILREIT KLNLSILNSS  300
VLSFGSSILE MTIVAQMDVD FCMNIEDLVK SLHTSCVGLD EASPCTLIAY GN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174ERKRRE
2170175RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026565.21e-126PREDICTED: transcription factor bHLH19
SwissprotQ1PF161e-48BH019_ARATH; Transcription factor bHLH19
TrEMBLA0A059B0T81e-128A0A059B0T8_EUCGR; Uncharacterized protein
STRINGXP_010026565.11e-126(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.13e-46bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]