PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS74153.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C2H2
Protein Properties Length: 280aa    MW: 30508.4 Da    PI: 10.3726
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS74153.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-051840123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C++Cgk++ +  +L  H+r+H
  EPS74153.1 18 YTCKICGKTCVSGRSLGGHMRKH 40
                9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.92E-91740No hitNo description
Gene3DG3DSA:3.30.160.601.0E-41744IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.2191845IPR007087Zinc finger, C2H2
PfamPF139126.7E-61842IPR007087Zinc finger, C2H2
SMARTSM003550.0031840IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802040IPR007087Zinc finger, C2H2
SuperFamilySSF576674.92E-9106133No hitNo description
PROSITE patternPS000280111133IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.429111138IPR007087Zinc finger, C2H2
SMARTSM003550.52111133IPR015880Zinc finger, C2H2-like
PfamPF139120.0024112135IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MVRTSMGDLQ ENRGRGPYTC KICGKTCVSG RSLGGHMRKH LSERQAQIQS AKSPIAVVKE  60
GDGIGTSGKE ETRLADPDHN PPGYELRDNP KKSRRISPES AAAKPGRKIS CHCKECGRGF  120
FSDKAMYGHM KTHSKKSSPN PPAAAAADAV HSEKTLAPVR RKRSRTHYRN HPSLPEKEAA  180
AALLLLAANR VNFHPTPFSA DDNSAYYGGR HEYSGERQPD RERSPKRLRP SSSSTDARVE  240
GSSAVEYRSN AAMCVVGGAF KWSPEPPPRC AGFVRCVAAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLS8EDU90.0S8EDU9_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.14e-13C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]