PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS72960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 192aa MW: 21560.6 Da PI: 6.522 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73.5 | 1.7e-23 | 16 | 63 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie ks qvtfskRr+g++KKA+EL++LC++e+a+i+fs+ gk++ + EPS72960.1 16 KIEAKSHLQVTFSKRRAGLFKKASELCTLCGVEIAIIVFSPAGKIFSF 63 699*****************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.3E-32 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.726 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.92E-26 | 8 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.18E-35 | 8 | 84 | No hit | No description |
PRINTS | PR00404 | 5.4E-19 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.4E-25 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-19 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-19 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009559 | Biological Process | embryo sac central cell differentiation | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MAKRPSLGRQ KIKIAKIEAK SHLQVTFSKR RAGLFKKASE LCTLCGVEIA IIVFSPAGKI 60 FSFGHPDVRL LVDRYLSRNS GESSGLSPPP SNGNGFSELN FHLDQILEEV EMERERGEIL 120 DGAGKSNGRY WWEEPVEKLG LQEAEQLRDA MEELRKNVGQ IILRFGFLDP YNHDGFIGCS 180 GPNDNLEFLY GF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088151.1 | 6e-70 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q4PSU4 | 2e-50 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | S8D0Q8 | 1e-138 | S8D0Q8_9LAMI; Uncharacterized protein | ||||
STRING | XP_009761267.1 | 6e-69 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-46 | AGAMOUS-like 61 |
Publications ? help Back to Top | |||
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