PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS72296.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 449aa MW: 47635.8 Da PI: 9.4826

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS72296.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	41	63	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H EPS72296.1 41 FVCEICNKGFQRDQNLQLHRRGH 63 89*******************88 PP
2	zf-C2H2	11.8	0.00074	117	139	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C C+k + +s+ k H++++ EPS72296.1 117 YNCDRCSKKYAVQSDRKAHMKVC 139 89*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.03E-7	40	63	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-5	40	63	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	41	63	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	41	63	IPR007087	Zinc finger, C2H2
Pfam	PF12171	7.0E-5	41	63	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	43	63	IPR007087	Zinc finger, C2H2
SMART	SM00355	270	82	112	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.6E-4	105	138	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.03E-7	112	137	No hit	No description
SMART	SM00355	110	117	137	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MENAPPPPPP LKKRRGLPGM PDPEAEVVAL SPKTLLSTNR FVCEICNKGF QRDQNLQLHR 60 RGHNLPWKLR QRSGQEVKKR VYVCPERSCL HHDPARALGD LTGIKKHFCR KHGEKKYNCD 120 RCSKKYAVQS DRKAHMKVCG TREYRCGCGA LFSRRDSFVT HRAFCDALAQ ENPPAVTISG 180 GNLKIPAVAP ASPPASSPHQ SPTPSAGVPS PGLSVQSSVE LPETQNPTPP VAETAAATAT 240 PPPPGTNRCS TSGTHIFPGG SGLFADAFPA STSAVVLPPR PPEYGNFIFP DRPAVDLVTL 300 SLSSPVYGGA SSVFSLQNPP QGYHPSSEPA LSATALLQKA AQIGSTSSGS SFIRGLRLAA 360 ATEDHPRDNN GSSSFGLDVR PDSSSGFSGL MMSPLEPTTL DFLGLGLVAG GEASTSNAGF 420 SAFFNPRIHL SPARFAGVKP GDGPFHRNN

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MENAPPPPPP LKKRRGLPGM PDPEAEVVAL SPKTLLSTNR FVCEICNKGF QRDQNLQLHR  60
RGHNLPWKLR QRSGQEVKKR VYVCPERSCL HHDPARALGD LTGIKKHFCR KHGEKKYNCD  120
RCSKKYAVQS DRKAHMKVCG TREYRCGCGA LFSRRDSFVT HRAFCDALAQ ENPPAVTISG  180
GNLKIPAVAP ASPPASSPHQ SPTPSAGVPS PGLSVQSSVE LPETQNPTPP VAETAAATAT  240
PPPPGTNRCS TSGTHIFPGG SGLFADAFPA STSAVVLPPR PPEYGNFIFP DRPAVDLVTL  300
SLSSPVYGGA SSVFSLQNPP QGYHPSSEPA LSATALLQKA AQIGSTSSGS SFIRGLRLAA  360
ATEDHPRDNN GSSSFGLDVR PDSSSGFSGL MMSPLEPTTL DFLGLGLVAG GEASTSNAGF  420
SAFFNPRIHL SPARFAGVKP GDGPFHRNN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-29	113	182	3	72	Zinc finger protein JACKDAW
5b3h_F	4e-29	113	182	3	72	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00403	DAP	Transfer from AT3G50700	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074522.1	1e-143	protein indeterminate-domain 2
Swissprot	Q9SCQ6	1e-119	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	S8D4K4	0.0	S8D4K4_9LAMI; Nucleic acid binding protein
STRING	XP_006473473.1	1e-132	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-109	C2H2-like zinc finger protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]