PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS67979.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | Trihelix | ||||||||
Protein Properties | Length: 388aa MW: 44448.1 Da PI: 10.2121 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 96 | 3.4e-30 | 10 | 93 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+kqe+laL+++r+em+ ++r+++ k+plWeevs+km+e gf+r+ k+Ckek+en+ k+++++ke+++++ + +t+++fdql+ EPS67979.1 10 RWPKQETLALLRIRSEMDVDFRDSSFKGPLWEEVSRKMAELGFKRTGKKCKEKFENVYKYHRRTKESRSSK--SDGKTYRFFDQLQ 93 8********************************************************************97..45567******98 PP | |||||||
2 | trihelix | 105.5 | 3.7e-33 | 290 | 375 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r++m+ ++ +g +k+plWe+vs++m++ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf++l+a EPS67979.1 290 RWPKTEVQALIKVRTNMDLKYHDGGAKGPLWEDVSSAMAKLGYTRSAKRCKEKWENINKYFKKVKETNKRR-PEDSKTCPYFHELDA 375 8********************************************************************97.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.8E-5 | 7 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 2.26E-25 | 9 | 74 | No hit | No description |
Pfam | PF13837 | 5.0E-20 | 9 | 95 | No hit | No description |
PROSITE profile | PS50090 | 7.189 | 9 | 67 | IPR017877 | Myb-like domain |
PROSITE profile | PS50090 | 7.143 | 283 | 347 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0032 | 287 | 349 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-4 | 289 | 346 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 1.0E-23 | 289 | 376 | No hit | No description |
CDD | cd12203 | 1.92E-25 | 289 | 354 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
GDVGGGGGNR WPKQETLALL RIRSEMDVDF RDSSFKGPLW EEVSRKMAEL GFKRTGKKCK 60 EKFENVYKYH RRTKESRSSK SDGKTYRFFD QLQALEENAP PHDTVSSMSP KPITVVPPVP 120 ANDPINAPSP PIHSFPTDPP QIQFPSGLLS TTSSSSSTSS DGDVHRRRGR KRRWKEFFHG 180 LLRDVIHKQE ELHRNFLETV EKRERERMAR DEAWKAREIS RMNREHELLA RERSMAAAKD 240 AAVISFLQKV SEHTDFSISI GNITPTAVSL PEDADTRHHT PGENASSSSR WPKTEVQALI 300 KVRTNMDLKY HDGGAKGPLW EDVSSAMAKL GYTRSAKRCK EKWENINKYF KKVKETNKRR 360 PEDSKTCPYF HELDAIYKQR AKTETPIP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 52 | 60 | KRTGKKCKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00244 | DAP | Transfer from AT1G76890 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022885875.1 | 1e-153 | trihelix transcription factor GT-2-like | ||||
Refseq | XP_022885876.1 | 1e-153 | trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 1e-131 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | S8CLE8 | 0.0 | S8CLE8_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Solyc12g056510.1.1 | 1e-149 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2402 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-131 | Trihelix family protein |
Publications ? help Back to Top | |||
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