PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS67450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | WRKY | ||||||||
Protein Properties | Length: 254aa MW: 28698.1 Da PI: 9.2546 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.1 | 3.6e-28 | 98 | 157 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--.SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeH.nh 58 ++Dgy+WrKYGqK+ ++++fpr+Y++C++a +Cpvkkkv+rs ed+++++ tY geH nh EPS67450.1 98 VKDGYQWRKYGQKVTRDNHFPRAYFKCSFApNCPVKKKVQRSVEDQSILIATYDGEHiNH 157 58***************************99**************************445 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.3E-27 | 89 | 159 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.814 | 93 | 160 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.11E-23 | 95 | 156 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.5E-31 | 98 | 159 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-22 | 99 | 154 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050691 | Biological Process | regulation of defense response to virus by host | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
LMEEITRVTE ENKKLIKLLQ TMSDGYIQLR NQVEELQSTR DNNTVSGKRK FAEQDAVGAS 60 ETSSSEEDSI KRPREEIVRA KITQVHVRTE PSDTSLIVKD GYQWRKYGQK VTRDNHFPRA 120 YFKCSFAPNC PVKKKVQRSV EDQSILIATY DGEHINHPRP STVEVKTGPD KGPTNGNTKT 180 ANSMSSSHPI VTLDLTKQKQ YNEEPKERVD RSDQHRLLVE QMASTLTNDP SFKAALAAAI 240 SGKLLHQGNQ YQNG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-18 | 97 | 154 | 13 | 69 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00251 | DAP | Transfer from AT1G80840 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082382.1 | 9e-89 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 2e-76 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | S8CL41 | 0.0 | S8CL41_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | cassava4.1_011696m | 2e-83 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2855 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 8e-79 | WRKY DNA-binding protein 40 |