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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS62339.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | TALE | ||||||||
Protein Properties | Length: 440aa MW: 48704.8 Da PI: 7.8988 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.9 | 1.7e-08 | 240 | 277 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp ++ LA+++gL+ +qV++WF N R + EPS62339.1 240 FEHflHPYPCDVDKHILARQTGLSRSQVSNWFINARVR 277 5544589*****************************88 PP | |||||||
2 | BELL | 109.1 | 2.6e-35 | 103 | 171 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 elq +k+kLl++ +eVd+rY++y +q+++v++sFeavag gsa++Yt++A+ka+SrhFrcL+d i+ i EPS62339.1 103 ELQTRKSKLLHMSDEVDRRYRHYTDQMKAVVGSFEAVAGAGSARVYTTMASKAMSRHFRCLRDGIVREI 171 89***************************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.3E-47 | 38 | 169 | IPR006563 | POX domain |
Pfam | PF07526 | 8.0E-41 | 43 | 167 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.483 | 218 | 281 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.9E-9 | 221 | 285 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.11E-11 | 221 | 282 | No hit | No description |
SuperFamily | SSF46689 | 7.7E-17 | 222 | 288 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-27 | 224 | 287 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.9E-17 | 238 | 277 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
VFPCEGSERP SRGLSLSLNS SNPAAVTLQS FELRQARSPQ VAVLAGSRYL LPAQHLLAEF 60 CNLHAEEAKT EPPPQRINEC DGDGDDDEGA VKRQSLYASG VLELQTRKSK LLHMSDEVDR 120 RYRHYTDQMK AVVGSFEAVA GAGSARVYTT MASKAMSRHF RCLRDGIVRE IRVLKKAMGE 180 RDGGGGGGAS KGETPRLRIL DQKLRQQRAL QQMSMMETHP WRPQRGLPER AVSVLRAWLF 240 EHFLHPYPCD VDKHILARQT GLSRSQVSNW FINARVRLWK PMVEEMYREE VKESEADDRG 300 GGGGGGRRND DRKPSQDQLM TGIDSDCLSY IINNAKTKNK GAILHQNPVA FADGGHQMVG 360 FDFSSYAGQH AAAPPSNYGV SLTLGLHQHG GGGFPPATAP PSMFDQMEDC QNAHFSLLDS 420 DNQTLHYRNL MGAQLLHDLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 5e-16 | 227 | 288 | 5 | 66 | Homeobox protein Meis2 |
3k2a_B | 5e-16 | 227 | 288 | 5 | 66 | Homeobox protein Meis2 |
4xrm_A | 4e-16 | 227 | 285 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 4e-16 | 227 | 285 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 4e-16 | 227 | 284 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 4e-16 | 227 | 284 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 4e-16 | 227 | 285 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 4e-16 | 227 | 285 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 298 | 306 | RGGGGGGGR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080922.1 | 1e-162 | homeobox protein BEL1 homolog | ||||
Refseq | XP_016440234.1 | 1e-162 | PREDICTED: homeobox protein BEL1 homolog | ||||
Refseq | XP_016440235.1 | 1e-162 | PREDICTED: homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 1e-109 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | S8C6I2 | 0.0 | S8C6I2_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | XP_009800804.1 | 1e-161 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5300 | 13 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 1e-104 | TALE family protein |
Publications ? help Back to Top | |||
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