PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS61848.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | C2H2 | ||||||||
Protein Properties | Length: 60aa MW: 7120.03 Da PI: 7.4441 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.6e-05 | 25 | 47 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C + F++ L H+++H EPS61848.1 25 YTCAFCRREFRSAQALGGHMNVH 47 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.39E-7 | 22 | 52 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.1E-4 | 23 | 50 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 7.5E-6 | 25 | 48 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.011 | 25 | 52 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 27 | 47 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 60 aa Download sequence Send to blast |
EDSWEVRAFE EDTNMLGCTW PPRSYTCAFC RREFRSAQAL GGHMNVHRRD RARLHELLPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-14 | 20 | 47 | 2 | 29 | superman protein |
2l1o_A | 1e-14 | 20 | 47 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023736263.1 | 3e-31 | transcriptional regulator SUPERMAN-like isoform X1 | ||||
Swissprot | O80942 | 4e-24 | ZFP10_ARATH; Zinc finger protein 10 | ||||
TrEMBL | S8DGG0 | 2e-37 | S8DGG0_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | XP_002519824.1 | 2e-30 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5953 | 21 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 8e-29 | C2H2 family protein |
Publications ? help Back to Top | |||
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