PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS60437.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | LBD | ||||||||
Protein Properties | Length: 118aa MW: 13510.7 Da PI: 9.9268 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 108.4 | 5.3e-34 | 12 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer..edamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 aCaaCk++rr+C+++C lap fpa++pk f+ vh+lFG++n+++ll++l++++r ++a++s+ ++A +r r PvyG++ i++l+ q++ ++++l+++ EPS60437.1 12 ACAACKYQRRRCKPECLLAPFFPADDPKMFQSVHRLFGVKNIQNLLRQLSPDRRamSTAVKSVKFHAYMRDRYPVYGCLVEIHHLSCQIQAAQEQLQAV 110 7************************************************9999866789*************************************998 PP DUF260 98 kee 100 ++ EPS60437.1 111 LNQ 113 776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.592 | 11 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-32 | 12 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MTLKSGSGSG QACAACKYQR RRCKPECLLA PFFPADDPKM FQSVHRLFGV KNIQNLLRQL 60 SPDRRAMSTA VKSVKFHAYM RDRYPVYGCL VEIHHLSCQI QAAQEQLQAV LNQISYYR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-26 | 8 | 117 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-26 | 8 | 117 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071735.1 | 2e-58 | LOB domain-containing protein 27 | ||||
Swissprot | Q9STS6 | 2e-34 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | S8DLL2 | 8e-83 | S8DLL2_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.D01865.1.p | 2e-56 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1449 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 6e-37 | LOB domain-containing protein 27 |
Publications ? help Back to Top | |||
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