PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS58540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 159aa MW: 18566.7 Da PI: 10.4075 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.1 | 9.3e-18 | 10 | 54 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 +i n+s r+ ++ kR++g++KK +E+SvLCd++++ ii+++ + l EPS58540.1 10 FITNESERKASYKKRKKGLIKKVSEISVLCDVDACAIIYGPYNGL 54 89**************************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.6E-19 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.54 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.04E-16 | 2 | 87 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-23 | 2 | 97 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-16 | 10 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-9 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MTRKKVTLAF ITNESERKAS YKKRKKGLIK KVSEISVLCD VDACAIIYGP YNGLDSPEVW 60 PSPEKATAVV ERFRRLSEME QGKKMLNQDS FTRQRIRKLE ENLRRVRKEN KRAELEIFMF 120 RFMAGIVGFE GFDVADAAEM GWVVKQLLRE VNFRIQDLK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVTLAFITNESERKASYKKRK |
2 | 21 | 25 | KKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088788.1 | 9e-64 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | S8BVC9 | 1e-112 | S8BVC9_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.B01455.1.p | 2e-55 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1532 | 23 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-42 | AGAMOUS-like 80 |
Publications ? help Back to Top | |||
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