PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS58511.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

HB-other

Protein Properties

Length: 298aa MW: 33098.1 Da PI: 7.0892

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS58511.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29	1.8e-09	5	40	19	54
HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 FeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 F ryp+ +++ LAk++gLt +qV++WF N R + EPS58511.1 5 FFTARYPKDSDKLMLAKQTGLTRSQVSNWFINARVR 40 66789*****************************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.467	1	44	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-13	4	51	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.0E-18	5	51	IPR009057	Homeodomain-like
CDD	cd00086	1.39E-9	9	44	No hit	No description
Pfam	PF05920	9.7E-13	10	40	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
FFFFFFTARY PKDSDKLMLA KQTGLTRSQV SNWFINARVR LWKPMVEEMY MEEMKENERN 60 GSEDMAGKSE RDESTAAAEN RNQKLQEGVP ILQNPAPAMS NSPTGMANMR NFNLIRPSEI 120 DHIAQVSPKK MRNVARDVLH SPASITAMSM ESKPGDEETL KFHADRQNRE AGGGGFTLLG 180 APTNFISGFG SYPMAELGRY TAEQFPAAYS GNGVSLTLGL PHSHCENLQI QGSHRHHHHQ 240 NFLPNQSIQL GRGVEISDPG DYAGLNPPAG AAPGNIYENI NIQSRKRFAS QLLPDFVA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027176216.1	1e-108	BEL1-like homeodomain protein 1
Refseq	XP_027176217.1	1e-108	BEL1-like homeodomain protein 1
Refseq	XP_027176218.1	1e-108	BEL1-like homeodomain protein 1
Refseq	XP_027176219.1	1e-108	BEL1-like homeodomain protein 1
Refseq	XP_027176220.1	1e-108	BEL1-like homeodomain protein 1
TrEMBL	S8C253	0.0	S8C253_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_002524053.1	9e-94	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1478	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	6e-37	BEL1-like homeodomain 1

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]