PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS58107.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C2H2
Protein Properties Length: 331aa    MW: 37582.8 Da    PI: 9.7881
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS58107.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-0599122123
                 EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                 y+C+ Cg++F++++ +  H +  H
  EPS58107.1  99 YSCGVCGRRFRSNDKMIDHFKQiH 122
                 99****************988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.63599127IPR007087Zinc finger, C2H2
SMARTSM003550.00799122IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-499123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280101122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MIESRSCSYS SYLLLLFIGS FGRNSKSRSF SSVNNVAVFW DLNNKPPNSV PPFHAAIRLK  60
KLAQSFGFVK HMIAYANSRP QSKAKKLESC RYIEPKEAYS CGVCGRRFRS NDKMIDHFKQ  120
IHEREHSKRT KQIESARGSR RVDLVGKYAF KMEKYKNAAR DISIPRPLLG YASEDEVRRA  180
GFLVRPDDDS ALWRHVRNMM ERRMIECFII IAAASSHDAA ADDCVGILRE AKGRRLKTVV  240
VGDSDCAGLK RAADARFSWR EVVIGKAGKE AVSVLSRWKD QSVLKGLEWS YDRREIDLDV  300
EPDFFSGEKK GGGGDDDDDG PWWKLEPGMV E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440402.12e-97uncharacterized protein LOC18046927
TrEMBLS8DFD90.0S8DFD9_9LAMI; Uncharacterized protein
STRINGXP_006440402.19e-97(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA121251920
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.17e-80C2H2 family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]