PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS57242.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family Trihelix
Protein Properties Length: 450aa    MW: 51180.2 Da    PI: 8.6929
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS57242.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix415.1e-131503687
    trihelix 36 kkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                +km+e gf+rs+k+C+ek+en+ k++k++k+g+ ++  ++ + +++fdqlea
  EPS57242.1  1 RKMSELGFQRSSKKCREKFENVYKYHKRTKDGRASK--PDGKAYRFFDQLEA 50
                589*******************************95..66678*******85 PP
2trihelix104.11e-32303388187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+k ev+aLi++r++++ +++++  k+plWee+s++m + g++rs+k+Ckekwen+nk+ykk+ke++k r +e+s+tcpyf+qlea
  EPS57242.1 303 RWPKAEVQALINLRTSLDIKYQETGPKGPLWEEISAAMGKLGYSRSSKRCKEKWENINKYYKKVKESNKIR-PEDSKTCPYFHQLEA 388
                 8********************************************************************87.9************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.2E-8151No hitNo description
SMARTSM007173.6E-4300362IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-5302359IPR009057Homeodomain-like
PROSITE profilePS500907.433302360IPR017877Myb-like domain
PfamPF138374.1E-22302389No hitNo description
CDDcd122036.36E-30302367No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
RKMSELGFQR SSKKCREKFE NVYKYHKRTK DGRASKPDGK AYRFFDQLEA LENNPFNPQP  60
PQGHRPPPAN SSSNNNNNNN NSNPSSLHIP PPQPSYGASL PTSPTPLSVL PPPPQMGGTP  120
HPPGNAFQQS HFHVSTSFLS GSISTSSTSS DDDIRRRGRK RKWKDYLQRL IRDVIQKQEE  180
LQKKFLETLE KRERDRIARE EAWRVQEIAR MNREQDLLVK ERSMSAAKDA AVIAFLQKIT  240
DQHNLQLPPL PVFSHPMPTP IIPPLPEALH VAVPEPAPPP ASVPEPNNNK NNGDNFSPAS  300
SSRWPKAEVQ ALINLRTSLD IKYQETGPKG PLWEEISAAM GKLGYSRSSK RCKEKWENIN  360
KYYKKVKESN KIRPEDSKTC PYFHQLEAIY KERAKNEIPP FAAAAPIMAR PEQQWPQHQQ  420
PGMQNQVLDN VGLNNDEEDE DDDDEDDDDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155161RRGRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010314480.11e-144trihelix transcription factor GT-2-like
SwissprotQ391171e-108TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLS8DD180.0S8DD18_9LAMI; Uncharacterized protein (Fragment)
STRINGSolyc12g056510.1.11e-143(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.28e-75Trihelix family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]