PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT33188
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 341aa    MW: 36629.5 Da    PI: 8.6589
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT33188genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.6e-13175221455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h ++Er+RR++ N++f eL  ++P +     kK++K +iL  A+ Y+k+Lq
  EMT33188 175 DHIMAERKRREKTNQRFIELSAVIPGL-----KKMDKGTILSNATSYVKQLQ 221
               699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.64171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-17175230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-11175221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-15176232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.63E-13176225No hitNo description
SMARTSM003532.2E-14177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAEPRNIFAA TPATLVASGS VATYGRKLMD DLDDSLLFMQ WALSTLQNEE DQGGAVENRA  60
GFPCLQALRD SPELAEAHNR LSSGTDSRPD GGIISPSPDA AVQQVSNSTF TSLPASGSMS  120
STGATNTHSM SWNFNAAHPS SVGGGTQAAR APLRSGVSQP TRRAAARKVG ACAQDHIMAE  180
RKRREKTNQR FIELSAVIPG LKKMDKGTIL SNATSYVKQL QEKVKSLEAA GGSHRSVETL  240
VLVREPSRHA APNSDEGSSL FSSAARMPAR SQRLPEIEAK LSENKVMLRI HCEINGKGIV  300
VRVLAELEEF HLCIVHNNVM PFTESTVIIT TMAKASFHLL L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179184ERKRRE
2180185RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659952e-35AK365995.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039J24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153393.10.0transcription factor bHLH19-like
TrEMBLM8CG260.0M8CG26_AEGTA; Transcription factor bHLH19
STRINGEMT331880.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.13e-37bHLH family protein